Customization of open-source products
Do you need to tweak BioPython tools?
Customize Integrated Genome Browser?
Manage tranSMART installation?
Connect tool "A" to tool "B"?
Example of Prior Work
ISA Tools
- Debugged open-source tool
- Made UI customizations
- Added lookups to a custom ontology service alternative to BioPortal
Galaxy
Customer: Mayo Clinic, Rochester, MN
- Developed a solution for fast processing of large FASTQ files
- Bypass space and concurrent user restrictions of usegalaxy.org
- Built an easily reproducible environment
- Deployed customer-specific web and command line tools not available in standard Galaxy package (e.g. tools to shuffle the reads to improve mapping quality; Bismark and BSMAP for bisulfite sequencing (methylation analysis), etc.)
- Maintained a self-contained instance of Galaxy using Oracle’s Virtual Box
- Optimized product performance